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On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach

机译:进化生物学网络中可进化性与网络鲁棒性之间的相互作用:一种系统生物学方法

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摘要

In the evolutionary process, the random transmission and mutation of genes provide biological diversities for natural selection. In order to preserve functional phenotypes between generations, gene networks need to evolve robustly under the influence of random perturbations. Therefore, the robustness of the phenotype, in the evolutionary process, exerts a selection force on gene networks to keep network functions. However, gene networks need to adjust, by variations in genetic content, to generate phenotypes for new challenges in the network’s evolution, ie, the evolvability. Hence, there should be some interplay between the evolvability and network robustness in evolutionary gene networks. In this study, the interplay between the evolvability and network robustness of a gene network and a biochemical network is discussed from a nonlinear stochastic system point of view. It was found that if the genetic robustness plus environmental robustness is less than the network robustness, the phenotype of the biological network is robust in evolution. The tradeoff between the genetic robustness and environmental robustness in evolution is discussed from the stochastic stability robustness and sensitivity of the nonlinear stochastic biological network, which may be relevant to the statistical tradeoff between bias and variance, the so-called bias/variance dilemma. Further, the tradeoff could be considered as an antagonistic pleiotropic action of a gene network and discussed from the systems biology perspective.
机译:在进化过程中,基因的随机传播和突变为自然选择提供了生物多样性。为了保留世代之间的功能表型,基因网络需要在随机扰动的影响下稳健发展。因此,表型的鲁棒性在进化过程中对基因网络施加选择力,以保持网络功能。但是,基因网络需要通过遗传含量的变化进行调整,以产生表型,以应对网络发展中的新挑战,即可进化性。因此,进化基因网络中的可进化性和网络健壮性之间应该存在一些相互作用。在这项研究中,从非线性随机系统的角度讨论了基因网络和生化网络的可进化性和网络健壮性之间的相互作用。发现如果遗传鲁棒性加上环境鲁棒性小于网络鲁棒性,则生物网络的表型在进化中是鲁棒的。从非线性随机生物网络的随机稳定性鲁棒性和敏感性出发,讨论了进化过程中遗传鲁棒性和环境鲁棒性之间的权衡,这可能与偏差和方差之间的统计折衷有关,即所谓的偏差/方差难题。此外,权衡可以被认为是基因网络的拮抗多效性作用,并从系统生物学的角度进行了讨论。

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  • 作者

    Chen, Bor-Sen; Lin, Ying-Po;

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  • 年度 2011
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  • 原文格式 PDF
  • 正文语种 {"code":"en","name":"English","id":9}
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